3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01767

Details:

PFam ID : PF01767

PFam Domain Description : Birnavirus VP3 protein

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 13

Average sequence length: 197.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01767	POLS_DXV96_727_984	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01767	Q9DKW6_IBDV_739_975	100

Sequence based PCA Plot of the family - PF01767 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=11
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay