3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01766

Details:

PFam ID : PF01766

PFam Domain Description : Birnavirus VP2 protein

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 41

Average sequence length: 190.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01766	D3GMG2_9VIRU_6_478	40

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01766	D3GMG2_9VIRU_6_478	97.5

Sequence based PCA Plot of the family - PF01766 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=1 Length=8
Motif3 Start=17 Length=8
Motif4 Start=392 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay