3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01764

Details:

PFam ID : PF01764

PFam Domain Description : Lipase (class 3)

Number of Sequence in 50% Dataset : 625

Number of Sequence in Full Dataset : 1830

Average sequence length: 139.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01764	Q4MWC5_BACCE_3_76	97.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01764	Q54B77_DICDI_196_386	100

Sequence based PCA Plot of the family - PF01764 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=73 Length=8
Motif3 Start=153 Length=8
Motif4 Start=226 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay