3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01762

Details:

PFam ID : PF01762

PFam Domain Description : Galactosyltransferase

Number of Sequence in 50% Dataset : 263

Number of Sequence in Full Dataset : 859

Average sequence length: 174.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01762	A5BK00_VITVI_104_349	93.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01762	B4H8V0_DROPE_200_263	100

Sequence based PCA Plot of the family - PF01762 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=14
Motif2 Start=3 Length=17
Motif3 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay