3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01761

Details:

PFam ID : PF01761

PFam Domain Description : 3-dehydroquinate synthase

Number of Sequence in 50% Dataset : 112

Number of Sequence in Full Dataset : 1354

Average sequence length: 254.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01761	E6YXA8_9RHIZ_1_93	76.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01761	B0MX11_9BACT_31_300	100

Sequence based PCA Plot of the family - PF01761 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=37 Length=17
Motif2 Start=70 Length=8
Motif3 Start=15 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay