3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01759

Details:

PFam ID : PF01759

PFam Domain Description : UNC-6/NTR/C345C module

Number of Sequence in 50% Dataset : 97

Number of Sequence in Full Dataset : 274

Average sequence length: 104.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01759	Q963I8_ANCCA_29_132	94.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01759	C0JPJ2_9BIVA_1610_1724	100

Sequence based PCA Plot of the family - PF01759 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay