3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01755

Details:

PFam ID : PF01755

PFam Domain Description : Glycosyltransferase family 25 (LPS biosynthesis protein)

Number of Sequence in 50% Dataset : 276

Number of Sequence in Full Dataset : 585

Average sequence length: 167.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01755	A1T077_PSYIN_680_803	94.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01755	F2AUE7_RHOBA_7_191	100

Sequence based PCA Plot of the family - PF01755 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=77 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay