3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01754

Details:

PFam ID : PF01754

PFam Domain Description : A20-like zinc finger

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 179

Average sequence length: 24.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01754	B0XG19_CULQU_697_720	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01754	D6PTG1_LITSI_1_17	97.1

Sequence based PCA Plot of the family - PF01754 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay