3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01753

Details:

PFam ID : PF01753

PFam Domain Description : MYND finger

Number of Sequence in 50% Dataset : 95

Number of Sequence in Full Dataset : 1695

Average sequence length: 41.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01753	A4REJ0_MAGO7_64_128	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01753	A4REJ0_MAGO7_64_128	100

Sequence based PCA Plot of the family - PF01753 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=14
Motif2 Start=1 Length=8
Motif3 Start=27 Length=24

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay