3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01751

Details:

PFam ID : PF01751

PFam Domain Description : Toprim domain

Number of Sequence in 50% Dataset : 155

Number of Sequence in Full Dataset : 4086

Average sequence length: 114.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01751	F0VRR4_NEOCA_466_630	84.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01751	C3QM74_9BACE_2_68	97.7

Sequence based PCA Plot of the family - PF01751 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=174 Length=8
Motif2 Start=1 Length=14
Motif3 Start=45 Length=8
Motif4 Start=145 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay