3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01750

Details:

PFam ID : PF01750

PFam Domain Description : Hydrogenase maturation protease

Number of Sequence in 50% Dataset : 199

Number of Sequence in Full Dataset : 633

Average sequence length: 126.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01750	D3M7B2_9ACTO_36_124	89.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01750	Q0SKR8_RHOSR_3_146	100

Sequence based PCA Plot of the family - PF01750 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=16 Length=18
Motif3 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay