3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01746

Details:

PFam ID : PF01746

PFam Domain Description : tRNA (Guanine-1)-methyltransferase

Number of Sequence in 50% Dataset : 113

Number of Sequence in Full Dataset : 1455

Average sequence length: 184.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01746	A8NRJ1_BRUMA_71_179	76.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01746	E3EG02_PAEPS_22_112	79

Sequence based PCA Plot of the family - PF01746 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=73 Length=8
Motif2 Start=1 Length=25
Motif3 Start=93 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay