3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01745

Details:

PFam ID : PF01745

PFam Domain Description : Isopentenyl transferase

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 33

Average sequence length: 172.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01745	B7Q6J5_IXOSC_94_122	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01745	IPT_PANAY_3_236	100

Sequence based PCA Plot of the family - PF01745 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=8
Motif2 Start=17 Length=8
Motif3 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay