3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01744

Details:

PFam ID : PF01744

PFam Domain Description : GLTT repeat (6 copies)

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 117

Average sequence length: 28.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01744	B7Q6J5_IXOSC_94_122	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01744	Q2JSC4_SYNJA_79_107	94.8

Sequence based PCA Plot of the family - PF01744 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay