3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01741

Details:

PFam ID : PF01741

PFam Domain Description : Large-conductance mechanosensitive channel, MscL

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 947

Average sequence length: 128.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01741	D0P0R6_PHYIT_52_163	70

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01741	D2R1B6_PIRSD_3_166	100

Sequence based PCA Plot of the family - PF01741 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=98 Length=8
Motif3 Start=12 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay