3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01739

Details:

PFam ID : PF01739

PFam Domain Description : CheR methyltransferase, SAM binding domain

Number of Sequence in 50% Dataset : 222

Number of Sequence in Full Dataset : 1481

Average sequence length: 190.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01739	F0YLV1_9STRA_98_320	97.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01739	Q9CZH1_MOUSE_170_270	100

Sequence based PCA Plot of the family - PF01739 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=163 Length=8
Motif2 Start=2 Length=11
Motif3 Start=140 Length=8
Motif4 Start=30 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay