3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01738

Details:

PFam ID : PF01738

PFam Domain Description : Dienelactone hydrolase family

Number of Sequence in 50% Dataset : 362

Number of Sequence in Full Dataset : 1728

Average sequence length: 208.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01738	Q1D1S0_MYXXD_88_243	95.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01738	A8F1K9_RICM5_558_639	100

Sequence based PCA Plot of the family - PF01738 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=63 Length=8
Motif2 Start=97 Length=11
Motif3 Start=130 Length=8
Motif4 Start=40 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay