3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01729

Details:

PFam ID : PF01729

PFam Domain Description : Quinolinate phosphoribosyl transferase, C-terminal domain

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 1227

Average sequence length: 167.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01729	Q40ID6_EHRCH_108_152	65.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01729	E7ENP7_HUMAN_26_139	99.8

Sequence based PCA Plot of the family - PF01729 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=55 Length=8
Motif3 Start=35 Length=17
Motif4 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay