3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01728

Details:

PFam ID : PF01728

PFam Domain Description : FtsJ-like methyltransferase

Number of Sequence in 50% Dataset : 216

Number of Sequence in Full Dataset : 2217

Average sequence length: 180.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01728	Q2H849_CHAGB_74_222	84.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01728	A8HVN2_CHLRE_199_273	100

Sequence based PCA Plot of the family - PF01728 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=69 Length=8
Motif2 Start=1 Length=8
Motif3 Start=165 Length=8
Motif4 Start=297 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay