3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01726

Details:

PFam ID : PF01726

PFam Domain Description : LexA DNA binding domain

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 637

Average sequence length: 63.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01726	E3MY50_CAERE_49_107	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01726	C5A6D0_THEGJ_149_216	100

Sequence based PCA Plot of the family - PF01726 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=17
Motif2 Start=4 Length=8
Motif3 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay