3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01725

Details:

PFam ID : PF01725

PFam Domain Description : Ham1 family

Number of Sequence in 50% Dataset : 119

Number of Sequence in Full Dataset : 1563

Average sequence length: 185.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01725	E3MY50_CAERE_49_107	74.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01725	E4VJZ4_9HELI_3_260	100

Sequence based PCA Plot of the family - PF01725 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=90 Length=11
Motif3 Start=124 Length=8
Motif4 Start=50 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay