3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01724

Details:

PFam ID : PF01724

PFam Domain Description : Domain of unknown function DUF29

Number of Sequence in 50% Dataset : 82

Number of Sequence in Full Dataset : 457

Average sequence length: 129.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01724	E0UMS7_CYAP2_8_149	77.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01724	B5ENB9_ACIF5_3_100	100

Sequence based PCA Plot of the family - PF01724 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=8 Length=27
Motif2 Start=79 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay