3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01722

Details:

PFam ID : PF01722

PFam Domain Description : BolA-like protein

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 1207

Average sequence length: 73.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01722	A6G963_9DELT_4_80	63.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01722	A6G963_9DELT_4_80	100

Sequence based PCA Plot of the family - PF01722 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=32 Length=14
Motif2 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay