3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01721

Details:

PFam ID : PF01721

PFam Domain Description : Class II bacteriocin

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 44

Average sequence length: 34.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01721	D4FD25_9LACO_29_64	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01721	D4FD25_9LACO_29_64	100

Sequence based PCA Plot of the family - PF01721 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay