3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01718

Details:

PFam ID : PF01718

PFam Domain Description : Orbivirus non-structural protein NS1, or hydrophobic tubular protein

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 15

Average sequence length: 388.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01718	A2TLM7_9REOV_3_151	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01718	D1GA90_9REOV_1_548	100

Sequence based PCA Plot of the family - PF01718 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=116 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay