3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01717

Details:

PFam ID : PF01717

PFam Domain Description : Cobalamin-independent synthase, Catalytic domain

Number of Sequence in 50% Dataset : 130

Number of Sequence in Full Dataset : 1207

Average sequence length: 292.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01717	E3SC43_9CHLO_1_130	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01717	Q12V82_METBU_4_248	99.8

Sequence based PCA Plot of the family - PF01717 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=48 Length=8
Motif3 Start=34 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay