3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01716

Details:

PFam ID : PF01716

PFam Domain Description : Manganese-stabilising protein / photosystem II polypeptide

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 131

Average sequence length: 206.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01716	E3SC43_9CHLO_1_130	9.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01716	E3SC43_9CHLO_1_130	100

Sequence based PCA Plot of the family - PF01716 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=31 Length=18
Motif2 Start=13 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay