3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01715

Details:

PFam ID : PF01715

PFam Domain Description : IPP transferase

Number of Sequence in 50% Dataset : 245

Number of Sequence in Full Dataset : 1721

Average sequence length: 230.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01715	A4RUI6_OSTLU_43_338	87.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01715	B2WIE7_PYRTR_24_106	100

Sequence based PCA Plot of the family - PF01715 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=62 Length=8
Motif2 Start=33 Length=11
Motif3 Start=1 Length=8
Motif4 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay