3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01712

Details:

PFam ID : PF01712

PFam Domain Description : Deoxynucleoside kinase

Number of Sequence in 50% Dataset : 121

Number of Sequence in Full Dataset : 681

Average sequence length: 142.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01712	A2EJC6_TRIVA_57_121	67.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01712	F1LCE5_ASCSU_49_212	100

Sequence based PCA Plot of the family - PF01712 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=17
Motif2 Start=82 Length=8
Motif3 Start=67 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay