3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01710

Details:

PFam ID : PF01710

PFam Domain Description : Transposase

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 251

Average sequence length: 105.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01710	Q84I59_LACPL_66_162	38.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01710	A4YIR4_METS5_49_139	98.8

Sequence based PCA Plot of the family - PF01710 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay