3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01709

Details:

PFam ID : PF01709

PFam Domain Description : Transcriptional regulator

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 1170

Average sequence length: 230.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01709	B8BV13_THAPS_18_288	70.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01709	B8BV13_THAPS_18_288	100

Sequence based PCA Plot of the family - PF01709 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=83 Length=8
Motif2 Start=1 Length=17
Motif3 Start=99 Length=11
Motif4 Start=253 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay