3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01706

Details:

PFam ID : PF01706

PFam Domain Description : Flagellar assembly protein FliH

Number of Sequence in 50% Dataset : 68

Number of Sequence in Full Dataset : 549

Average sequence length: 109.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01706	FLIG_BUCAP_215_324	52.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01706	E8R6I8_ISOPI_45_165	100

Sequence based PCA Plot of the family - PF01706 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=60 Length=8
Motif3 Start=45 Length=8
Motif4 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay