3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01704

Details:

PFam ID : PF01704

PFam Domain Description : UTP--glucose-1-phosphate uridylyltransferase

Number of Sequence in 50% Dataset : 98

Number of Sequence in Full Dataset : 554

Average sequence length: 323.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01704	D9PJ13_9ZZZZ_5_92	74.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01704	B0EPY3_ENTDI_29_447	99.0

Sequence based PCA Plot of the family - PF01704 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=5 Length=8
Motif2 Start=21 Length=8
Motif3 Start=102 Length=8
Motif4 Start=57 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay