3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01702

Details:

PFam ID : PF01702

PFam Domain Description : Queuine tRNA-ribosyltransferase

Number of Sequence in 50% Dataset : 157

Number of Sequence in Full Dataset : 1385

Average sequence length: 229.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01702	A8PFK1_COPC7_413_520	67.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01702	B4DFM7_HUMAN_141_210	100

Sequence based PCA Plot of the family - PF01702 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=170 Length=11
Motif2 Start=35 Length=11
Motif3 Start=94 Length=8
Motif4 Start=1 Length=23

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay