3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01700

Details:

PFam ID : PF01700

PFam Domain Description : Orbivirus VP3 (T2) protein

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 25

Average sequence length: 499.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01700	E3STZ2_9REOV_1_143	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01700	Q2YH55_9REOV_47_937	100

Sequence based PCA Plot of the family - PF01700 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=25 Length=18
Motif2 Start=16 Length=8
Motif3 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay