3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01697

Details:

PFam ID : PF01697

PFam Domain Description : Glycosyltransferase family 92

Number of Sequence in 50% Dataset : 168

Number of Sequence in Full Dataset : 487

Average sequence length: 239.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01697	A8QB53_BRUMA_54_194	83.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01697	A8PI31_BRUMA_1_159	99.1

Sequence based PCA Plot of the family - PF01697 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=49 Length=8
Motif3 Start=128 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay