3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01696

Details:

PFam ID : PF01696

PFam Domain Description : Adenovirus EB1 55K protein / large t-antigen

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 32

Average sequence length: 307.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01696	Q8UY90_9ADEN_92_166	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01696	E1BL_ADET1_2_390	100

Sequence based PCA Plot of the family - PF01696 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay