3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01695

Details:

PFam ID : PF01695

PFam Domain Description : IstB-like ATP binding protein

Number of Sequence in 50% Dataset : 353

Number of Sequence in Full Dataset : 1759

Average sequence length: 152.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01695	D7BB24_MEISD_248_368	88.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01695	A3ETI4_9BACT_1_45	99.7

Sequence based PCA Plot of the family - PF01695 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=58 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay