3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01693

Details:

PFam ID : PF01693

PFam Domain Description : Caulimovirus viroplasmin

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 514

Average sequence length: 43.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01693	Q67458_9VIRU_158_195	61.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01693	B0DM00_LACBS_138_182	99.4

Sequence based PCA Plot of the family - PF01693 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=39 Length=11
Motif2 Start=18 Length=20
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay