3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01687

Details:

PFam ID : PF01687

PFam Domain Description : Flavoprotein

Number of Sequence in 50% Dataset : 112

Number of Sequence in Full Dataset : 1384

Average sequence length: 127.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01687	O52941_9CYAN_162_214	87.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01687	E6R272_CRYGW_25_212	100

Sequence based PCA Plot of the family - PF01687 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=31 Length=8
Motif2 Start=1 Length=8
Motif3 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay