3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01686

Details:

PFam ID : PF01686

PFam Domain Description : Adenovirus penton base protein

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 46

Average sequence length: 418.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01686	PEN3_ADEB2_1_153	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01686	A5X2Q3_9ADEN_1_305	100

Sequence based PCA Plot of the family - PF01686 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=2 Length=8
Motif2 Start=127 Length=8
Motif3 Start=19 Length=8
Motif4 Start=94 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay