3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01684

Details:

PFam ID : PF01684

PFam Domain Description : ET module

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 66

Average sequence length: 81.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01684	Q94247_CAEEL_226_318	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01684	Q94247_CAEEL_226_318	95.3

Sequence based PCA Plot of the family - PF01684 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=19
Motif2 Start=1 Length=8
Motif3 Start=77 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay