3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01683

Details:

PFam ID : PF01683

PFam Domain Description : EB module

Number of Sequence in 50% Dataset : 215

Number of Sequence in Full Dataset : 445

Average sequence length: 56.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01683	A8PS29_BRUMA_110_194	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01683	B4JYI5_DROGR_175_267	98.8

Sequence based PCA Plot of the family - PF01683 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=70 Length=8
Motif4 Start=58 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay