3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01682

Details:

PFam ID : PF01682

PFam Domain Description : DB module

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 132

Average sequence length: 94.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01682	A8WZ26_CAEBR_341_439	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01682	E3MFN7_CAERE_165_273	100

Sequence based PCA Plot of the family - PF01682 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay