3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01678

Details:

PFam ID : PF01678

PFam Domain Description : Diaminopimelate epimerase

Number of Sequence in 50% Dataset : 102

Number of Sequence in Full Dataset : 2320

Average sequence length: 120.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01678	D2RLE6_ACIFV_142_260	52.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01678	D2VFY6_NAEGR_233_396	98.0

Sequence based PCA Plot of the family - PF01678 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=39 Length=17
Motif2 Start=30 Length=8
Motif3 Start=10 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay