3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01676

Details:

PFam ID : PF01676

PFam Domain Description : Metalloenzyme superfamily

Number of Sequence in 50% Dataset : 142

Number of Sequence in Full Dataset : 1676

Average sequence length: 415.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01676	A8FZ61_SHESH_65_301	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01676	Q8SV36_ENCCU_160_251	99.7

Sequence based PCA Plot of the family - PF01676 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=59 Length=32
Motif2 Start=262 Length=8
Motif3 Start=200 Length=17
Motif4 Start=246 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay