3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01674

Details:

PFam ID : PF01674

PFam Domain Description : Lipase (class 2)

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 173

Average sequence length: 189.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01674	A8FZ61_SHESH_65_301	83.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01674	F1YJW6_9ACTO_76_304	100

Sequence based PCA Plot of the family - PF01674 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=8
Motif2 Start=2 Length=17
Motif3 Start=93 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay