3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01673

Details:

PFam ID : PF01673

PFam Domain Description : Herpesvirus putative major envelope glycoprotein

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 53

Average sequence length: 438.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01673	A4GRK3_9ALPH_52_653	96.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01673	A4GRK3_9ALPH_52_653	100

Sequence based PCA Plot of the family - PF01673 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=457 Length=8
Motif2 Start=428 Length=8
Motif3 Start=139 Length=8
Motif4 Start=498 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay