3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01671

Details:

PFam ID : PF01671

PFam Domain Description : African swine fever virus multigene family 360 protein

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 46

Average sequence length: 195.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01671	3606L_ASFK5_101_328	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01671	D4I5L2_ASF_98_307	100

Sequence based PCA Plot of the family - PF01671 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=121 Length=8
Motif3 Start=107 Length=8
Motif4 Start=157 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay