3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01666

Details:

PFam ID : PF01666

PFam Domain Description : DX module

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 17

Average sequence length: 73.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01666	O17964_CAEEL_341_420	44.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01666	Q21247_CAEEL_269_359	100

Sequence based PCA Plot of the family - PF01666 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=49 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay